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Meta Analysis
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metaDE R and RRA R
microarray
meta analysis
4.2 years ago
lily
▴ 20
0
votes
1
reply
579
views
Meta_analysis of microarray data
microarray
microarray data
Meta Analysis
platform
updated 5.2 years ago by
James W. MacDonald
65k • written 5.2 years ago by
Jamal
• 0
0
votes
1
reply
1.1k
views
Meta_analysis of different platforms of microarray data
microarray
meta analysis
cancer
Software
R
updated 5.3 years ago by
James W. MacDonald
65k • written 5.3 years ago by
Jamal
• 0
0
votes
0
replies
601
views
how to convert DEGs indices to gene symbols or gene names which i get during meta analysis through MAMA package using pvalcombination function and me…
MAMA
pvalcombination
meta analysis
metaMA
DEGs' indices
6.0 years ago
niteshkumar20sept
• 0
0
votes
1
reply
765
views
meta de r package
meta analysis
6.4 years ago
lily
▴ 20
1
vote
0
replies
1.0k
views
Meta Analysis on CAMERA results
limma
camera
cohen d
meta analysis
7.2 years ago
Andy91
▴ 60
0
votes
1
reply
1.2k
views
meta analysis of clc output(differential expression data )
rnaseq
metaseq
clc output
pvalue
meta analysis
updated 7.3 years ago by
Koki
▴ 10 • written 7.3 years ago by
hassangiahi
• 0
2
votes
3
replies
1.7k
views
combine different GSE on different GPL
annotation
genesymbols
meta analysis
8.0 years ago
wahaha123
• 0
8 results • Page
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Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Comment: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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Rory Stark
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